Scientific Core Facilities and Services
Scientists at DKFZ and its partner sites have access to a broad portfolio of research infrastructures, including Core Facilities, as well as data management and IT-services. Core Facilities provide access to cutting-edge instrumentation, user support, and technology development. Data management and IT-services address IT infrastructure needs and offer tools for organizing and managing research data properly.
News from our Core Facilities
On Tuesday, 16 June 2026, at 11:00, Dr. Kristina Giorda from Watchmaker Genomics will present the TAPS+ method at DKFZ Heidelberg. TAPS+ enables non-destructive methylation sequencing while preserving DNA complexity. This makes it possible to study genetic and epigenetic changes together, even in challenging clinical samples such as FFPE and cfDNA. The seminar will cover recent advances, assay performance, and new opportunities for integrated mutation and methylation profiling in a single workflow.
Location: German Cancer Research Center (DKFZ), Heidelberg, Technologiepark 3, 2nd floor, B2.300
Date: Tuesday, 16 June 2026
Time: 11:00
Speaker: Dr. Kristina Giorda, Watchmaker Genomics
We are pleased to announce the merger of the Chemical Biology Core Facility and the Microarray Core Facility. The integration of these two facilities creates the new Molecular Profiling and Screening Core Facility (MoPS), which will offer an expanded range of analytical services and expertise from a single source.
By combining expertise and infrastructure, the facility broadens its service portfolio and establishes a strong foundation for the further development of analytical services.
As part of this integration, the existing portfolio of the Microarray Core Facility will be expanded as of 01 August 2026 to include Biacore surface plasmon resonance (SPR) analyses, High Throughput Screening (HTS), and the High Throughput Pseudovirion-Based Neutralization Assay (PBNA). The merger also brings the two staff members of the former Chemical Biology Core Facility into the Molecular Profiling and Screening Core Facility, further strengthening the team’s expertise and service capabilities.
The renaming of the Microarray Core Facility to the Molecular Profiling and Screening Core Facility reflects the continuous expansion of the analytical portfolio and the associated growth of service offerings. At the same time, the new name provides a framework for future developments and additional services.
With the Molecular Profiling and Screening Core Facility, the research community will have access to an even broader range of analytical and scientific services in support of cutting-edge research.
For further information or inquiries, please contact mops(at)lists.dkfz.de
Our Microarray Core Facility has installed the new QX700™ Droplet Digital PCR System from Bio-Rad. This next-generation platform replaces the former QX200 and significantly expands our capabilities: instead of two color channels, the QX700 provides up to seven channels for multiplexing, enabling the parallel and highly precise quantification of multiple targets within a single sample.
Droplet Digital PCR (ddPCR) works by partitioning a sample into thousands of droplets, each functioning as an individual PCR reaction, allowing highly sensitive and absolute quantification of nucleic acids.
The QX700 is ideally suited for:
- Absolute quantification of DNA and RNA
- Detection of rare mutations
- Copy number variation (CNV) analysis
- Identification of genomic alterations
- Liquid biopsy applications and minimal residual disease monitoring
- Validation of NGS results
With its enhanced multiplexing capacity and high sensitivity, the system is particularly powerful for translational and clinically oriented research projects, especially when sample material is limited.
Learn more:
https://www.dkfz.de/en/microarray
We are happy to discuss potential applications and experimental strategies for your project.
Did you know? The DKFZ Core Facilities are now on LinkedIn! We share exciting insights into our technologies, updates, and news from the Core Facilities.
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DKFZ Core Facilities and Services are listed below according to their area of specialty.
Genome, Epigenome & Transcriptome
The NGS Core Facility provides highly parallel DNA and RNA sequencing services based on the Illumina MiSeq, NextSeq and NovaSeq technologies as well as on the Oxford Nanopore technologies.
More info about the Next Generation Sequencing Core Facility
The Molecular Profiling and Screening Core Facility provides state-of-the-art microarray technologies for Expression Profiling, Methylation Analysis, Genotyping/Copy-Number-Variation(CNV). High-throughput protein analysis utilizing cutting-edge Olink® technology, kinase activity profiling as well as assisted access to ddPCR and qPCR instruments and Ingenuity are also part of our service portfolio.
More info about the Molecular Profiling and Screening Core Facility
The Single-cell Open Lab provides an infrastructure for processing cells, preparing libraries for single-cell sequencing as well as spatial omics.
The Preclinical and Translational Pathology offers an infrastructure for services along the entire histological workflow - from sample preparation and various staining methods to the digitization of sections.
More information about the Preclinical and Translational Pathology
Proteome
The unit provides mass spectrometry based Proteomics. State-of-the-art hardware in combination with specialized workflows allows most sensitive and in-depth Proteome analysis.
The Single-cell Open Lab provides an infrastructure for processing cells, preparing libraries for single-cell sequencing as well as spatial omics.
The Molecular Profiling and Screening Core Facility provides state-of-the-art microarray technologies for Expression Profiling, Methylation Analysis, Genotyping/Copy-Number-Variation(CNV). High-throughput protein analysis utilizing cutting-edge Olink® technology, kinase activity profiling as well as assisted access to ddPCR and qPCR instruments and Ingenuity are also part of our service portfolio.
More info about the Molecular Profiling and Screening Core Facility
The Antibodies Core Facility offers the production of monoclonal (mouse/rat) antibodies using the hybridoma technology and the production of polyclonal (guinea pig) ABs. In addition the Antibodies Core Facility offers antibody sequencing, engineering and recombinant expression.
The Preclinical and Translational Pathology offers an infrastructure for services along the entire histological workflow - from sample preparation and various staining methods to the digitization of sections.
More information about the Preclinical and Translational Pathology
Metabolome
The Metabolomics Core Technology Platform (MCTP) is a core facility of Heidelberg University and officially collaborates with DKFZ. It is localized within the Centre for Organismal Studies. We offer a broad range of qualitative and quantitative metabolomics services from diverse sample matrices to all DKFZ groups as internal users.
Cellular and Preclinical Imaging
The Electron Microscopy Core Facility performs experiments in full service for ultrastructural studies by TEM as well as SEM.
The Light Microscopy Core Facility offers a variety of advanced imaging-related services at several locations on the campus. We provide consultation, hands-on training, technical support and open access (24/7) to cutting-edge instrumentation and a broad range of applications.
The Small Animal Imaging Center supports users in the application of numerous radiological methods such as ultrasound, optical imaging, µPET, µCT, µSPECT and MRT measurements to collect and quantify morphological and functional data in vivo.
The service Unit for Radiopharmaceuticals and Preclinical Studies provides consultation and support in imaging and irradiation design/irradiation for preclinical studies as well as in experimental design for animal studies.
More info about the Service Unit for Radiopharmaceuticals and Preclinical Studies
Cytometry and Screening
The Immune Monitoring Unit supports oncology studies (IITs or industry-sponsored studies) of all phases using various state-of-the-art immunological analysis techniques.
The Flow Cytometry Core Facility advises and supports scientists in the planning, execution and evaluation of flow cytometry analyses and cell sorting. Modern instruments (analytical instruments and cell sorters) as well as various software are available for this purpose.
More info about the Flow Cytometry Core Facility
The Chemical Biology Core Facility (CBCF) offers infrastructure and expertise for high throughput screenings of small molecules against biological targets of interest. Support and consultancy are provided for assay development, especially suited for high-throughput experiments. Thus the aim of the CBCF is to enable research groups to identify and develop small active compounds which will be essential for addressing biological questions and/or being starting points for drug development.
More info about the Chemical Biology Core Facility
Whole Tissue Analysis
The Immune Monitoring Unit supports oncology studies (IITs or industry-sponsored studies) of all phases using various state-of-the-art immunological analysis techniques.
The Light Microscopy Core Facility offers a variety of advanced imaging-related services at several locations on the campus. We provide consultation, hands-on training, technical support and open access (24/7) to cutting-edge instrumentation and a broad range of applications.
The Single-cell Open Lab provides an infrastructure for processing cells, preparing libraries for single-cell sequencing as well as spatial omics.
The Preclinical and Translational Pathology offers an infrastructure for services along the entire histological workflow - from sample preparation and various staining methods to the digitization of sections.
More information about the Preclinical and Translational Pathology
Reagents and Resources for Cancer Research
The Antibodies Core Facility offers the production of monoclonal (mouse/rat) antibodies using the hybridoma technology and the production of polyclonal (guinea pig) ABs. In addition the Antibodies Core Facility offers antibody sequencing, engineering and recombinant expression.
The Cellular Tools Core Facility offers standardized vector and clone resources as well as modular services for cell-based gain- and loss-of-function technologies.
The Dieter Morszeck Biorepository is a fully automated cold storage facility in which valuable liquid biospecimens can be stored.
More info about the Dieter Morszeck Biorepository
The service Unit for Radiopharmaceuticals and Preclinical Studies provides consultation and support in imaging and irradiation design/irradiation for preclinical studies as well as in experimental design for animal studies.
More info about the Service Unit for Radiopharmaceuticals and Preclinical Studies
Animal Services
The Center for Preclinical Research (ZPF) advises and assists researchers in the design and realization of their animal experiments. It consists of four subdivisions: Central Animal Laboratory, Tumor Models, Microbiological Diagnostics and Transgene Service.
Research Data Management
The Omics IT and Data Management Core Facility (ODCF) provides high-throughput computing, data management and basic bioinformatics services to groups at the DKFZ and their collaborating partners.
More info about the Omics IT and Data Management Core Facility
Library and IT Services
The Information Technology Core Facility (ITCF) is responsible for optimum usage of IT at DKFZ, for supporting staff of all departments in matters of choosing IT tools for their special needs as well as for providing central IT Services and support which are essential for everyone at DKFZ.
The Library provides among other things scientific literature and information needed by the scientists of the German Cancer Research Center.
Enabling Technology Department
The Enabling Technology Department is headed by the Chief Enabling Technology Officer Prof. Elisa May. She oversees the following Core Facilities: Antibodies, Cellular Tools, Chemical Biology (with EMBL), Dieter Morszeck Biorepository, Electron Microscopy, Flow Cytometry, Light Microscopy, Microarray, Next Generation Sequencing, Preclinical and Translational Pathology, Proteomics, Single-cell OpenLab, Small Animal Imaging, and the Scullery. The Department is also involved in two projects on biomage data management: the DFG project "Information Infrastructure for BioImage Data Management – I3D:bio", and the consortium "NFDI4BioImage" in the National Research Data Infrastructure NFDI, where Prof. May serves as a Co-Speaker.
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Dr. Christian Schmidt
Scientific Project Manager and Research Data Management Microscopy
+49 6221 42 2657 -