Publications
Publications listed below are related to the current projects and recent research activities. A complete publication list can be found under the ORCID number https://orcid.org/0000-0002-7030-8153 from Maïwen Caudron-Herger
Selected Original Research Articles
Rajagopal V, Seiler J, Nasa I, Cantarella S, Theiss J, Herget F, Kaifer B, Schneider M, Helm D, König J, Zarnack K, Diederichs S, Kettenbach AN and Caudron-Herger M. An atlas of RNA-dependent proteins in cell division reveals the riboregulation of mitotic protein-protein interactions. bioRxiv 2024; doi: https://doi.org/10.1101/2024.09.25.614981
Wassmer E, Koppány G, Hermes M, Diederichs S and Caudron-Herger M. Refining the pool of RNA-binding domains advances the classification and prediction of RNA-binding proteins.
Nucleic Acids Res. 2024; gkae536, doi: https://doi.org/10.1093/nar/gkae536
Rajagopal V, Loubal AS, Engel N, Wassmer E, Seiler J, Schilling O, Caudron-Herger M and Diederichs S. Proteome-wide identification of RNA-dependent proteins in lung cancer cells.
Cancers. 2022; 14:6109. doi: https://doi.org/10.3390/cancers14246109
Caudron-Herger M*, Ralf E. Jansen, Elsa Wassmer and Sven Diederichs. RBP2GO: a comprehensive pan-species database on RNA-binding proteins, their interactions and functions.
Nucleic Acids Res. 2021; 49:D425-436. *Corresponding author. doi: https://doi.org/10.1093/nar/gkaa1040
Lyu Y, Caudron-Herger M and Diederichs S. circ2GO: a database linking circular RNAs to gene function.
Cancers. 2020; 12:2975. doi: https://doi.org/10.3390/cancers12102975
Dhamija S, Yang CM, Seiler J, Myacheva K, Caudron-Herger M, Wieland A, Adbelkarim M, Sharma Y, Riester M, Gross M, Maurer J and Diederichs S. A pan-cancer analysis reveals non-stop extension mutations causing SMAD4 tumour suppressor degradation.
Nature Cell Biology. 2020; 22:999-1010. doi: https://doi.org/10.1038/s41556-020-0551-7
Caudron-Herger M*, Barreau E, Nasa I, Schultz A, Seiler J, Kettenbach AN and Diederichs S*. Identification, quantification and bioinformatic analysis of RNA-dependent proteins by RNase treatment and density gradient ultracentrifugation using R-DeeP.
Nature Protocols. 2020; 15:1338-1370. *Corresponding authors. doi: https://doi.org/10.1038/s41596-019-0261-4
Caudron-Herger M*, Rusin SF, Adamo ME, Seiler J, Schmid V, Barreau E, Kettenbach AN and Diederichs S*. R-DeeP: Proteome-wide and quantitative identification of RNA-dependent proteins by density gradient ultracentrifugation.
Mol Cell. 2019; 75:184-199. *Corresponding authors. doi: https://doi.org/10.1016/j.molcel.2019.04.018
Sharma Y, Miladi M, Dukare S, Boulay Karine, Caudron-Herger M, Groß Matthias, Backhofen Rolf and Diederichs S. A pan-cancer analysis of synonymous mutations.
Nat. Commun. 2019; 10, Article number:2569. doi: https://doi.org/10.1038/s41467-019-10489-2
Goyal A, Fiskin E, Gutschner T, Polycarpou-Schwarz M, Groß M, Neugebauer J, Gandhi M, Caudron-Herger M, Benes V and Diederichs S. A cautionary tale of sense-antisense gene pairs: Independent regulation despite inverse correlation of expression.
Nucleic Acids Research. 2017; 45: 12496-12508. doi: https://doi.org/10.1093/nar/gkx952
Seiler J, Breinig M, Caudron-Herger M, Polycarpou-Schwarz M, Boutros M, and Diederichs S. The lncRNA VELUCT strongly regulates viability of lung cancer cells despite its extremely low abundance.
Nucleic Acids Res. 2017; epub: DOI: 10.1093/nar/gkx076. doi: https://doi.org/10.1093/nar/gkx076
Selected Reviews and Comments
Yang L, Ulitsky I, Gilbert WV, Yi C, Ule J, Caudron-Herger M. Voices "The challenges of investigating RNA function".
Molecular Cell. 2024; 84: P3567-3571. doi: https://doi.org/10.1016/j.molcel.2024.08.019
Caudron-Herger M and Diederichs S. Insights from the degradation mechanism of Cyclin D into targeted therapy of the cancer cell cycle.
Sig Transduct Target Ther. 2021; 6: 311. doi: https://doi.org/10.1038%2Fs41392-021-00732-y
Gandhi M, Caudron-Herger M and Diederichs S. RNA motif and combinatorial prediction of interactions, stability and localization of noncoding RNAs.
Nat Struct Mol Biol. 2018; 24: 1070-1076. doi: https://doi.org/10.1038/s41594-018-0155-0