Deep Learning in Medical Image Analysis
Seminar WS24/25
Current information
(17.07.2024)
Thanks to the great amount of interest and encouraging feedback from the previous four seminar installations, we will offer a fifth round of the Deep Learning in Medical Image Analysis seminar in winter semester 2024/25.
The seminar will take place on Wednesday afternoons, with one briefing session and 6 presentation slots. This seminar is mostly targeted at Master students of the Computer Science and Scientific Computing genre, who have some previous knowledge of neural networks and are interested in more in-depth methodology and application in the medical imaging domain.
The participant number is limited to 12 people.
Update 18.10.2024: Registration is closed for this year. Interested students may apply for the next iteration of the seminar next year.
Summary
This seminar will discuss current research in the field of machine learning-based biomedical image processing. In contrast to general image analysis applications the medical domain provides special challenges that we want to focus on within the seminar:
- Data scarcity: It is rather common that research on complex medical applications faces the problem of only small amounts of available data. This is rarely due to intrinsic rareness of certain medical cases, but rather to difficulties related to the use of highly sensitive personal information, which is well-protected by law. Current research hence deals with approaches that get by with little or no annotated data at all.
- Robustness: Often decisive between life and death, algorithms in the medical domain necessarily need to ensure robustness as a criterion. Outliers have to be discovered automatically and treated separately during processing. In a more general sense, the processing systems should themselves be aware about the uncertainty in their computations and provide the user with related quantitative information.
- Generalizability: Medical applications are highly subject to variability. This includes, for example, different versions and settings of recording devices as well as different modes of handling by physicians. With the intention of broad applicability beyond a specific setting, solid generalizability of the method is required.
A detailed list of topics will be released around the briefing date.
General information
Briefing:
There will be a briefing session including a presentation and the distribution of the topics as well as an introduction of grading criteria and other requirements for students. This will also provide an opportunity to ask any questions regarding seminar organization.
Registration:
Please send an e-mail to Maike Rees or Tom Rix (for contact details see below).
Audience:
The seminar ideally suits students of Computer Science and Scientific Computing. We offer both Bachelor- and Master-level topics (Pro-/Seminar), but the main focus lies on advanced techniques, so prior knowledge on Machine Learning, especially Neural Networks, is a precondition.
Schedule:
We will meet in person in Radioonkologisches Entwicklungszentrum (REZ, INF 223) on the following dates:
Briefing session: Friday, 18.10.2024, 10:30 a.m (approximately one hour), online on zoom
Regular sessions: Wednesdays, 2 p.m. - 3.30 p.m. (s.t.), in person
- nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation
- ViT: An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale
- MedNeXt: Transformer-Driven Scaling of ConvNets for Medical Image Segmentation
- Federated learning enables big data for rare cancer boundary detection
- Expert-level detection of pathologies from unannotated chest X-ray images via self-supervised learning
- A whole-slide foundation model for digital pathology from real-world data
- Brain Imaging Generation with Latent Diffusion Models
- Right for the Wrong Reason: Can Interpretable ML Techniques Detect Spurious Correlations?
- Detecting when pre-trained nnU-Net lesion segmentation models fail silently for Covid-19 lung
- Algorithmic fairness in artificial intelligence for medicine and healthcare
- ecVL: Hierarchical Video-Language Pretraining for Zero-shot Surgical Phase Recognition
- Xplainer: From X-Ray Observations to Explainable Zero-Shot Diagnosis
Contact
If you have any questions regarding the seminar, need support or would like further information, please do not hesitate to contact us. We will get back to you as soon as possible.
4 Employees
-
Prof. Dr. Lena Maier-Hein
Responsible Lecturer
-
Maike Rees
Teaching Assistant
-
Tom Rix
Teaching Assistent
-
Dr. Ömer Sümer
Teaching Assistant