Metabolic crosstalk in cancer
- Functional and Structural Genomics

Prof. Dr. Christiane Opitz
Evidence emerging in the last years has led to the re-appreciation of the central role of altered cell metabolism in cancer. We have identified a metabolic pathway of the essential amino acid tryptophan as a key element promoting malignant brain tumors.

Our Research
Tryptophan metabolites activate the dioxin receptor resulting in enhanced invasiveness and clonogenicity of brain tumor cells and increased formation of brain tumors. While the role of the dioxin receptor in cancer biology is well established, the signaling pathways through which the dioxin receptor promotes cancer are poorly understood. Due to the fact that tryptophan metabolites as (patho-)physiologically relevant endogenous dioxin receptor ligands were just identified, the signaling pathways activated by these endogenous dioxin receptor ligands remain elusive. As different dioxin receptor ligands exert diverse biological effects, it is expected that tryptophan metabolites will activate other signaling pathways than the classical and well-studied exogenous ligand dioxin. Inhibition of the dioxin receptor may be a new approach for cancer therapy. Understanding the downstream signaling pathways that are responsible for the tumor-promoting effects of endogenous dioxin receptor activation may identify more specific therapeutic targets for the treatment of tumors that rely on this pathway and and reveal potential biomarkers for monitoring biological activity of these pathways.
In the future we plan to identify the signaling pathways activated by tryptophan degradation in brain tumor cells. Specifically we will analyze the signaling pathways downstream of endogenous dioxin receptor signaling and the signaling pathways activated by tryptophan depletion. In addition we aim to use our expertise in monitoring cancer metabolism for the analysis of nicotinamide metabolism in brain tumors. Preliminary evidence suggests that several enzymes implicated in nicotinamide metabolism are overexpressed in brain tumors. Our group aims at delineating the role of nicotinamide metabolism in brain tumors by targeted metabolomics and bioinformatics approaches using malignant brain tumor cells and tumor stem cells. If the metabolism of nicotinamide is found to be functionally relevant for the malignant phenotype or the treatment resistance of brain tumors, small molecule screens will be performed to identify inhibitors of the respective enzymes. In addition, nicotinamide will be measured in biofluids of brain tumor patients and correlated with the activity of the respective enzymes in the tumor tissue with the aim of identifying biomarkers for the activity of nicotinamide metabolism for future stratification of patients to treatment with inhibitors of this pathway. In addition, “metabolic flux analyses” will be used to model tryptophan and nicotinamide metabolism.
Our Team
Our team is characterized by a clear division of responsibilities and close collaboration across disciplinary boundaries. This structure enables efficient workflows and a successful exchange between theory and practice.
The department is led by Prof. Dr. Opitz, who is supported in organizational matters by Ms. Flörchinger. Together, they coordinate all projects and processes.
Dr. Prentzell plays a key role in the supervision and implementation of laboratory-based projects. Acting as the representative of Prof. Dr. Opitz, she also serves as a vital link between the various areas of work.
Another central pillar of our team is our bioinformatics unit, headed by Dr. Sadik and complemented by our PhD student Manar Abdalazem. Together, they develop data-driven models that directly inform and enhance experimental research. Our PhD student Ivana Karabogdan also applies computational approaches, with a particular focus on structural analyses.
Highly qualified scientists and postdocs contribute valuable insights thanks to their diverse backgrounds. Of particular note is Dr. Panitz, who, as a clinician scientist, combines clinical expertise with academic research. Dr. Holfelder, Dr. Saharuka, and Dr. Henneberg are dedicated early-career researchers who make significant contributions to our projects.
Our technical assistants, Bianca Berdel and Lara Eckhardt, ensure the smooth day-to-day operation of the lab. They maintain our infrastructure and actively support our research efforts. The team is completed by our committed lab technician trainee, Mia Elsesser.
The hands-on execution of many research projects lies with our PhD students: Francisco Yanqui Rivera, Sophie Seifert, Deepak Sayeeram, Livnat Barski, and Tim Kühn. They are a driving force behind our scientific progress.
Over the years, numerous students have enriched our team – through their project contributions and their day-to-day engagement in the lab, they have left a lasting mark on both our research and our collaborative spirit.
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Prof. Dr. Christiane Opitz
Division Head
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Dr. Mirja Tamara Prentzell
Deputy Division Head
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Beate Flörchinger
Office Management
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Dr. Ahmed Sadik
Bioinformatics Scientist
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Dr. Verena Panitz
Clinician Scientist
Selected Publications
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